Evidence that the 36kb plasmid of Brachyspira hyodysenteriae contributes to virulence

Swine dysentery (SD) results from infection of the porcine large intestine with the anaerobic intestinal spirochaete Brachyspira hyodysenteriae. Recently the genome of virulent Australian B. hyodysenteriae strain WA1 was sequenced, and a 36. kilobase (kb) circular plasmid was identified. The plasmid contained 31 genes including six rfb genes that were predicted to be involved with rhamnose biosynthesis, and others associated with glycosylation. In the current study a set of PCRs was developed to amplify portions of nine of the plasmid genes. When used with DNA extracted from virulent strain B204, PCR products were generated, but no products were generated with DNA from avirulent strain A1. Analysis of the DNA using pulsed field gel electrophoresis (PFGE) identified a plasmid band in strains WA1 and B204, but not in strain A1. These results demonstrate that strain A1 does not contain the plasmid, and suggests that lack of the plasmid may explain why this strain is avirulent. To determine how commonly strains lacking plasmids occur, DNA was extracted from 264 Australian field isolates of B. hyodysenteriae and subjected to PCRs for three of the plasmid genes. Only one isolate (WA400) that lacked the plasmid was identified, and this absence was confirmed by PFGE analysis of DNA from the isolate and further PCR testing. To assess its virulence, 24 pigs were experimentally challenged with cultures of WA400, and 12 control pigs were challenged with virulent strain WA1 under the same conditions. Significantly fewer (P= 0.03) of the pigs challenged with WA400 became colonised and developed SD (13/24; 54%) compared to the pigs infected with WA1 (11/12; 92%). Gross lesions in the pigs colonised with WA400 tended to be less extensive than those in pigs colonised with WA1, although there were no obvious differences at the microscopic level. The results support the likelihood that plasmid-encoded genes of B. hyodysenteriae are involved in colonisation and/or disease expression

All-Optical Production of a Degenerate Fermi Gas

We achieve degeneracy in a mixture of the two lowest hyperfine states of $^6$Li by direct evaporation in a CO$_2$ laser trap, yielding the first all-optically produced degenerate Fermi gas. More than $10^5$ atoms are confined at temperatures below $4 \mu$K at full trap depth, where the Fermi temperature for each state is $8 \mu$K. This degenerate two-component mixture is ideal for exploring mechanisms of superconductivity ranging from Cooper pairing to Bose condensation of strongly bound pairs.Comment: 4 pgs RevTeX with 2 eps figs, to be published in Phys. Rev. Let

Lithium, sodium, and potassium magnesiate chemistry : a structural overview

Until recently, deprotonative metalation reactions have been performed using organometallic compounds that contain only a single metal (eg, organolithium reagents). Since the turn of the millennium, bimetallic compounds such as alkali metal magnesiates have begun to emerge as a new class of complementary metalating reagents. These have many benefits over traditional lithium compounds, including their enhanced stability at ambient temperatures, their tolerance of reactive functional groups and their stability in common reaction solvents. In recent years, lots of attention has been focused on understanding the structure of alkali metal magnesiates in an effort to maximize synthetic efficiency and thus shed insight into approaches for future rational design. In this chapter, the diverse structural chemistry of alkali metal magnesiate compounds reported since 2007 will be summarized

Remote functionalisation via sodium alkylamidozincate intermediates : access to unusual fluorenone and pyridyl ketone reactivity patterns

Treating fluorenone or 2-benzoylpyridine with the sodium zincate [(TMEDA)center dot Na(mu-Bu-t)(mu-TMP)Zn(Bu-t)] in hexane solution, gives efficient Bu-t addition across the respective organic substrate in a highly unusual 1,6-fashion, producing isolable organometallic intermediates which can be quenched and aerobically oxidised to give 3-tert-butyl-9H-fluoren-9-one and 2-benzoyl-5-tert-butylpyridine respectively

Synthetic and reactivity studies of hetero-tri-anionic sodium zincates

The synthesis and characterisation of several sodium zincate complexes is reported. The all-alkyl monomeric sodium zincate (PMEDTA)·Na(μ-CH2SiMe3)ZntBu2 2, is prepared by combining an equimolar quantity of tBu2Zn, nBuNa and PMDETA (N,N,N′,N′′,N′′-pentamethyldiethylenetriamine)]. A similar approach was used to prepare and isolate the unusual dimeric zincate [(PMEDTA)·Na(μ-nBu)ZntBu2]2 3. When an equimolar mixture of nBuNa, tBu2Zn and TMP(H) (2,2,6,6-tetramethylpiperidine) are combined in hexane, the hetero-tri-leptic TMP(H)-solvated zincate (TMPH)Na(μ-TMP)(μ-nBu)ZntBu 4 was forthcoming. Complex 4 can also be prepared using a rational approach [i.e., utilising two molar equivalents of TMP(H)]. When TMEDA is reacted with an equimolar mixture of nBuNa, tBu2Zn and TMP(H), the monomeric sodium zincate (TMEDA)Na(μ-TMP)(μ-nBu)ZntBu 5 was obtained – this complex is structurally similar to the synthetically useful relation TMEDA)·Na(μ-TMP)(μ-tBu)Zn(tBu) 1. By changing the sodium reagent used in the synthesis of 5, it was possible to prepare (TMEDA)Na(μ-TMP)(μ-Me3SiCH2)ZntBu 6. By reacting 5 with cis-DMP(H) (cis-2,6-dimethylpiperidine), the zincate could thermodynamically function as a amide base, to give the transamination product (TMEDA)Na(μ-cis-DMP)(μ-nBu)ZntBu 7, although no crystals could be grown. However, when HMDS(H) (1,1,1,3,3,3-hexamethyldisilazane) or PEA(H) [(+)-bis[(R)-1-phenylethyl]amine] is reacted with 5, crystalline (TMEDA)Na(μ-HMDS)(μ-nBu)ZntBu 8 or (TMEDA)Na(μ-PEA)(μ-nBu)ZntBu 9 are isolated respectively. With PNA(H) (N-phenylnaphthalen-1-amine) the reaction took a different course and resulted in the formation of the dimeric sodium amide complex [(TMEDA)Na(PNA)]2 10. When reacted with benzene, it appears that a TMEDA-free variant of 5 functions thermodyanically as an nBu base to yield the previously reported (TMEDA)Na(μ-TMP)(tBu)Zn(μ-C6H4)Zn(tBu)(μ-TMP)Na(TMEDA) 11. Finally when reacted with TEMPO (2,2,6,6-tetramethylpiperidinyloxy), 5 undergoes a single electron transfer reaction to form (TMEDA)Na(μ-TMP)(μ-TEMPO)ZnnBu 12

The ecology of seamounts: structure, function, and human impacts.

In this review of seamount ecology, we address a number of key scientific issues concerning the structure and function of benthic communities, human impacts, and seamount management and conservation. We consider whether community composition and diversity differ between seamounts and continental slopes, how important dispersal capabilities are in seamount connectivity, what environmental factors drive species composition and diversity, whether seamounts are centers of enhanced biological productivity, and whether they have unique trophic architecture. We discuss how vulnerable seamount communities are to fishing and mining, and how we can balance exploitation of resources and conservation of habitat. Despite considerable advances in recent years, there remain many questions about seamount ecosystems that need closer integration of molecular, oceanographic, and ecological research

Neutrophil gelatinase-associated lipocalin: its response to hypoxia and association with acute mountain sickness.

Acute Mountain Sickness (AMS) is a common clinical challenge at high altitude (HA). A point-of-care biochemical marker for AMS could have widespread utility. Neutrophil gelatinase-associated lipocalin (NGAL) rises in response to renal injury, inflammation and oxidative stress. We investigated whether NGAL rises with HA and if this rise was related to AMS, hypoxia or exercise. NGAL was assayed in a cohort (n = 22) undertaking 6 hours exercise at near sea-level (SL); a cohort (n = 14) during 3 hours of normobaric hypoxia (FiO2 11.6%) and on two trekking expeditions (n = 52) to over 5000 m. NGAL did not change with exercise at SL or following normobaric hypoxia. During the trekking expeditions NGAL levels (ng/ml, mean ± sd, range) rose significantly (P < 0.001) from 68 ± 14 (60-102) at 1300 m to 183 ± 107 (65-519); 143 ± 66 (60-315) and 150 ± 71 (60-357) at 3400 m, 4270 m and 5150 m respectively. At 5150 m there was a significant difference in NGAL between those with severe AMS (n = 7), mild AMS (n = 16) or no AMS (n = 23): 201 ± 34 versus 171 ± 19 versus 124 ± 12 respectively (P = 0.009 for severe versus no AMS; P = 0.026 for mild versus no AMS). In summary, NGAL rises in response to prolonged hypobaric hypoxia and demonstrates a relationship to the presence and severity of AMS